Make v9_M a database
done

./blastn -query /Volumes/Bay3/Software/ncbi-blast-2.2.26+/query/RepBase_1707_invrep.fa -db /Volumes/Bay3/Software/ncbi-blast-2.2.26+/db/oyster_v9_M -outfmt 6 -out /Volumes/Bay3/Software/ncbi-blast-2.2.26+/out/invREP_oyster_v9_M_blastnout -task blastn -num_threads 2 -evalue 1E-10

http://eagle.fish.washington.edu/cnidarian/invREP_oyster_v9_M_blastnout



./blastn -query /Volumes/Bay3/Software/ncbi-blast-2.2.26+/query/oyster_v9_M.fa -db /Volumes/Bay3/Software/ncbi-blast-2.2.26+/db/RepBase_1707_invrep -outfmt 6 -out /Volumes/web/cnidarian/oyster_v9_M_RepBase_invrep_blastnout -task blastn -num_threads 2 


http://eagle.fish.washington.edu/cnidarian/oyster_v9_M_RepBase_invrep_blastnout


./blastn -query /Volumes/Bay3/Software/ncbi-blast-2.2.26+/query/RepBase_1707_invrep.fa -db /Volumes/Bay3/Software/ncbi-blast-2.2.26+/db/oyster_v9_M -outfmt 6 -out /Volumes/web/cnidarian/invREP_oyster_v9_M_blastnout_b -task blastn -num_threads 2 

http://eagle.fish.washington.edu/cnidarian/invREP_oyster_v9_M_blastnout_b